The Ship Missiles are an upgrade to Samus's gunship arsenal in Metroid Prime 3: Corruption, allowing it to shoot Missiles at certain things that can't be destroyed or reached. It fires powerful Missiles at enemies or other targets through a bombing run. It is particularly effective in destroying walls or objects made of Maldium. It was most likely made by the Galactic Federation, as Samus obtains them in the Federation Landing Site on Bryyo. Samus refills her ammo of Ship Missiles by picking up Ship Missile Ammo.
- Although it is Samus that picks Ship Missile Ammo, the gunship can shoot Ship Missiles even before Samus comes in contact with the ship.